RNAseq of Marchantia polymorpha: 3-weels thallus WT-female Non-axenic... - SRA

SRX8018561: RNAseq of Marchantia polymorpha: 3-weels thallus WT-female Non-axenic rep3
1 ILLUMINA (NextSeq 500) run: 22.1M spots, 4.4G bases, 2.8Gb downloads

Design: Total RNA isolated from 3-weeks-old thalli (QIAGEN RNAeasy Plant Kit) was assessed for quality with a Nanodrop spectrophotometer and a Bioanalyzer 2100 microfluidics system (Agilent). Library preparation substrates were enriched for mRNA (Illumina TruSeq Stranded mRNA technology). Sequencing used the Illumina NextSeq500 in High-Output mode (20 million single-ended 75b reads per sample)

Submitted by: Monash University

Study: Oil body formation in Marchantia is controlled by MpC1HDZ and serves as a defense against herbivores

PRJNA615642 • SRP254378 • All experiments • All runs

show Abstracthide Abstract

Marchantia polymorpha encodes for a single ortholog to Class I HD-Zip transcription factors. Here, we analyze transcriptional changes associated with loss-of-function alleles of this gene in control and non-axenic conditions.

Sample:

SAMN14463785 • SRS6392102 • All experiments • All runs

Organism: Marchantia polymorpha subsp. ruderalis

Library:

Name: WT-female Non-axenic rep3

Instrument: NextSeq 500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: Oligo-dT

Layout: PAIRED

Runs: 1 run, 22.1M spots, 4.4G bases, 2.8Gb

Run	# of Spots	# of Bases	Size	Published
SRR11440502	22,112,841	4.4G	2.8Gb	2020-05-12

ID:: 10455232

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Recent activity